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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117856425_117857607_R

Intron Information:

Intron Rank:
128917
Intron Class:
major
Intron Phase:
Intron Coordinates:
117856425 - 117857607
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCGATGTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
89.2
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.3
0.57
1
68.7
41.9
Minor 5ss
25.7
-2.8
3.6
35.8
41.1
Minor BPS
71
0.66
1.3
76.89
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016497
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047893
117855309 - 117858636
3328