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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117857695_117858331_R

Intron Information:

Intron Rank:
128918
Intron Class:
major
Intron Phase:
Intron Coordinates:
117857695 - 117858331
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
ACTTGCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
76.2
0.59
0.9
68.8
35.9
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
69.4
0.69
1.7
81.92
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016497
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047893
117855309 - 117858636
3328