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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117940313_117963335_R

Intron Information:

Intron Rank:
148089
Intron Class:
major
Intron Phase:
Intron Coordinates:
117940313 - 117963335
Intron Length:
23023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGAGAG
5'SS Class:
major
3'SS Sequence:
TTTATTCTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTCTTATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
56.9
42.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.6
0.8
0.7
80.9
31.1
Minor 5ss
27.9
-2.5
3.5
29
43.6
Minor BPS
57.7
0.1
1.8
65.22
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026968
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041247
117940205 - 118009058
68854