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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117963416_118009020_R

Intron Information:

Intron Rank:
148090
Intron Class:
major
Intron Phase:
Intron Coordinates:
117963416 - 118009020
Intron Length:
45605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
ACCCTTTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCACAT
U12 Branch Point Sequence:
ATCCCCCCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
65.1
0.38
1.1
71.2
35.2
Major PPT
77.7
0.62
0.8
69
36.5
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
49.5
-0
1.9
63.8
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026968
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041247
117940205 - 118009058
68854