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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117994051_117996011_F

Intron Information:

Intron Rank:
149548
Intron Class:
major
Intron Phase:
Intron Coordinates:
117994051 - 117996011
Intron Length:
1961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGCTT
5'SS Class:
major
3'SS Sequence:
TGTTGTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGATGATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
75.5
40.2
Major BPS
75.8
0.64
1
65.8
41
Major PPT
77.2
0.61
0.9
74.7
40
Minor 5ss
39.1
-1.2
3.6
61.1
43.6
Minor BPS
48.9
-0
2.1
72.32
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030476
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023796
117993932 - 118011476
17545