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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_117996109_118009045_F

Intron Information:

Intron Rank:
149549
Intron Class:
major
Intron Phase:
Intron Coordinates:
117996109 - 118009045
Intron Length:
12937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAAGATG
5'SS Class:
major
3'SS Sequence:
GAATTTGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
CTTACCAGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
66.7
44.4
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
65.4
0.35
1
59
42.4
Minor 5ss
34.8
-1.7
3.3
39.8
46
Minor BPS
49.3
0.03
1.9
72.48
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030476
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023796
117993932 - 118011476
17545