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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118009166_118011203_F

Intron Information:

Intron Rank:
149550
Intron Class:
major
Intron Phase:
Intron Coordinates:
118009166 - 118011203
Intron Length:
2038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTACCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCCTTCTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
100
1.24
0.5
100
0
Major PPT
80.3
0.68
0.8
73.4
30.5
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
47.5
-0.1
1.9
69.07
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030476
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023796
117993932 - 118011476
17545