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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118043401_118046081_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
118043401 - 118046081
Intron Length:
2681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTGAT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAG
U12 Branch Point Sequence:
CTTAGCAGAATT
Flanking Amino Acid:
DPLDATQEYTAWAMVDGGSN
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
72.3
39.5
Major BPS
60.4
0.26
1.6
69.7
44.2
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
38.5
-1.3
3.5
57.3
47.4
Minor BPS
45
-0.3
2.1
66.49
44.2

Associated Gene:

Gene:
IMPAD1
Ensembl Gene ID:
ENSAPLG00000007571
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007849
118041612 - 118058405
16794