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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118073468_118074191_R

Intron Information:

Intron Rank:
152005
Intron Class:
major
Intron Phase:
Intron Coordinates:
118073468 - 118074191
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTTTC
5'SS Class:
major
3'SS Sequence:
TGTCCTCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTCTCACAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.1
78.3
32.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.8
0.6
0.8
74.4
30.8
Minor 5ss
44.9
-0.6
2.8
61.1
43.8
Minor BPS
45
-0.3
2.2
65.26
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029346
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018503
118073267 - 118123465
50199