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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118076682_118123195_R

Intron Information:

Intron Rank:
152007
Intron Class:
major
Intron Phase:
Intron Coordinates:
118076682 - 118123195
Intron Length:
46514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
85.9
0.81
0.8
81.2
36.5
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029346
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018503
118073267 - 118123465
50199