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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118113088_118123195_R

Intron Information:

Intron Rank:
152008
Intron Class:
major
Intron Phase:
Intron Coordinates:
118113088 - 118123195
Intron Length:
10108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.9
0.83
0.8
82
33.9
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
69.5
0.7
1.5
84.38
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029346
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025852
118112305 - 118123465
11161