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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118127381_118135218_F

Intron Information:

Intron Rank:
141267
Intron Class:
major
Intron Phase:
Intron Coordinates:
118127381 - 118135218
Intron Length:
7838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCAGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTTTACTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
62
37.3
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
83.7
0.76
0.8
82.7
27.5
Minor 5ss
44.2
-0.6
3
60
44.7
Minor BPS
66.1
0.49
1.8
79.2
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026059
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024494
118127264 - 118140088
12825