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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118135356_118139973_F

Intron Information:

Intron Rank:
141268
Intron Class:
major
Intron Phase:
Intron Coordinates:
118135356 - 118139973
Intron Length:
4618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATTTGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
62.5
44.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
39.2
-1.2
2.8
41.1
45.2
Minor BPS
71
0.74
1.5
85.88
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026059
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024494
118127264 - 118140088
12825