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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118140391_118145558_F

Intron Information:

Intron Rank:
141270
Intron Class:
major
Intron Phase:
Intron Coordinates:
118140391 - 118145558
Intron Length:
5168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTGACTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86.8
0.83
0.7
81.7
29.5
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
52.8
0.08
1.8
64.96
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026059
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040954
118140109 - 118146252
6144