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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118253173_118255361_F

Intron Information:

Intron Rank:
125210
Intron Class:
major
Intron Phase:
Intron Coordinates:
118253173 - 118255361
Intron Length:
2189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TCCCTGAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTGAT
U12 Branch Point Sequence:
TCTCCCTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72
32.5
Major BPS
68.7
0.46
1.3
59.3
47.1
Major PPT
60
0.23
1
54.8
38.1
Minor 5ss
32.3
-2
3
36.7
41.7
Minor BPS
62.3
0.38
1.6
71.51
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017440
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031655
118252785 - 118255600
2816