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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118324885_118372875_F

Intron Information:

Intron Rank:
151014
Intron Class:
major
Intron Phase:
Intron Coordinates:
118324885 - 118372875
Intron Length:
47991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
81.8
31.8
Major BPS
100
1.24
0.5
100
0
Major PPT
88.2
0.86
0.7
80.5
36.7
Minor 5ss
34.8
-1.7
3.3
49.9
46.4
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031136
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034926
118324754 - 118386778
62025