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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118433797_118435765_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118433797 - 118435765
Intron Length:
1969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GACTTCTAAAAA
Flanking Amino Acid:
GRPPSARDLQLALAELYEDE
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.5
0.73
0.8
76.6
32.2
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
49.6
-0
1.8
58.02
41.3

Associated Gene:

Gene:
UBXN2B
Ensembl Gene ID:
ENSAPLG00000007644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033284
118433640 - 118469375
35736
ENSAPLT00000032904
118433640 - 118451069
17430
ENSAPLT00000018339
118433640 - 118478590
44951
ENSAPLT00000007954
118433640 - 118451968
18329