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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118437262_118438304_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118437262 - 118438304
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTAAGAGT
5'SS Class:
major
3'SS Sequence:
ATTTTCTTGGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCACCCTTAAAC
Flanking Amino Acid:
LQCIKGRRLKCLKIDSFRSL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.2
60.6
43.5
Major BPS
100
1.24
0.5
100
0
Major PPT
80.4
0.68
1
77.6
36.1
Minor 5ss
29.8
-2.3
3.1
37.9
41.1
Minor BPS
67.8
0.54
1.4
70.43
40.2

Associated Gene:

Gene:
UBXN2B
Ensembl Gene ID:
ENSAPLG00000007644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033284
118433640 - 118469375
35736