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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118438377_118439901_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118438377 - 118439901
Intron Length:
1525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGAA
5'SS Class:
major
3'SS Sequence:
TACTATTCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCTTATGAACA
Flanking Amino Acid:
RSMSDDKENQRFYSGDSEYR
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
32.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.7
0.4
1.1
67.4
37.7
Minor 5ss
38.2
-1.3
3.1
49.1
47.1
Minor BPS
53.8
0.11
1.7
66
40

Associated Gene:

Gene:
UBXN2B
Ensembl Gene ID:
ENSAPLG00000007644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018339
118433640 - 118478590
44951
ENSAPLT00000007954
118433640 - 118451968
18329
ENSAPLT00000033284
118433640 - 118469375
35736
ENSAPLT00000032904
118433640 - 118451069
17430