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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118440062_118440589_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118440062 - 118440589
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTC
5'SS Class:
strong_major
3'SS Sequence:
GTATTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTGCAATA
Flanking Amino Acid:
RSSGDFNKAKSFSGGGYRLG
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
75.7
32.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.7
0.82
0.8
84.8
35.6
Minor 5ss
34.3
-1.8
3.6
49.9
46.6
Minor BPS
46
-0.3
2.1
63.31
37.7

Associated Gene:

Gene:
UBXN2B
Ensembl Gene ID:
ENSAPLG00000007644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032904
118433640 - 118451069
17430
ENSAPLT00000018339
118433640 - 118478590
44951
ENSAPLT00000007954
118433640 - 118451968
18329
ENSAPLT00000033284
118433640 - 118469375
35736