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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118440668_118444099_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118440668 - 118444099
Intron Length:
3432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTCCCTATTT
Flanking Amino Acid:
SEYIYGENQDVQVLLKLWRN
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
86.5
0.82
0.7
85.4
28.5
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
59.6
0.38
2
80.43
41.9

Associated Gene:

Gene:
UBXN2B
Ensembl Gene ID:
ENSAPLG00000007644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033284
118433640 - 118469375
35736
ENSAPLT00000032904
118433640 - 118451069
17430
ENSAPLT00000018339
118433640 - 118478590
44951
ENSAPLT00000007954
118433640 - 118451968
18329