Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118444210_118444662_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

118444210 - 118444662

Intron Length:

453

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTATATTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTTTTATAT

Flanking Amino Acid:

NAQFLESVKRGEIPVELQRL

Intron Amino Acid Position:

218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.9

80.2

30.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

75.6

0.58

1.1

80.9

35.1

Minor 5ss

39.1

-1.2

2.8

40.8

45.4

Minor BPS

59.3

0.37

1.7

77.45

Associated Gene:

Gene:

UBXN2B

Ensembl Gene ID:

ENSAPLG00000007644

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033284

118433640 - 118469375

35736

ENSAPLT00000032904

118433640 - 118451069

17430

ENSAPLT00000018339

118433640 - 118478590

44951

ENSAPLT00000007954

118433640 - 118451968

18329