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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118450364_118451065_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118450364 - 118451065
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATCTTA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTGAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTCTTCTTGAAG
Flanking Amino Acid:
ILNTVILQQLN*
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
70.6
36.1
Major BPS
68
0.45
1
57.8
39
Major PPT
81.2
0.7
0.9
83.2
25.6
Minor 5ss
49.2
-0
2.7
64.8
40.9
Minor BPS
63.3
0.27
1.5
66.99
41

Associated Gene:

Gene:
UBXN2B
Ensembl Gene ID:
ENSAPLG00000007644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032904
118433640 - 118451069
17430