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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118450364_118461296_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118450364 - 118461296
Intron Length:
10933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATCTTA
5'SS Class:
major
3'SS Sequence:
TTCTTCCAGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAG
U12 Branch Point Sequence:
TTTTCTTCCAGT
Flanking Amino Acid:
ILNTVILQQLNLDCYRSQQG
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
70.6
36.1
Major BPS
46.4
-0.2
1.7
61.8
44.5
Major PPT
73.4
0.53
1
74.1
35.7
Minor 5ss
49.2
-0
2.7
64.8
40.9
Minor BPS
50.6
0.1
2.2
79.65
42.8

Associated Gene:

Gene:
UBXN2B
Ensembl Gene ID:
ENSAPLG00000007644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033284
118433640 - 118469375
35736