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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118476290_118477934_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118476290 - 118477934
Intron Length:
1645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TACTTCTGCACT
Flanking Amino Acid:
ATFWSLFYLLKNPEAMRAAI
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
72.6
37.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80
0.68
0.8
78.1
35
Minor 5ss
37.2
-1.4
2.9
46.5
35.3
Minor BPS
53
0.17
1.9
73.44
43.4

Associated Gene:

Gene:
CYP7A1
Ensembl Gene ID:
ENSAPLG00000008062
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008400
118473553 - 118481030
7478