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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118478546_118479212_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118478546 - 118479212
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATGT
5'SS Class:
major
3'SS Sequence:
TATTTTGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTATTTATCA
Flanking Amino Acid:
KKFHFATSAKAFGHGSIDPA
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.8
0.58
1.1
72.4
42.2
Minor 5ss
37.9
-1.4
3.4
56.7
47.4
Minor BPS
59.5
0.3
1.8
71.85
40.6

Associated Gene:

Gene:
CYP7A1
Ensembl Gene ID:
ENSAPLG00000008062
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008400
118473553 - 118481030
7478