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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118479454_118480680_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118479454 - 118480680
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TACTTCTAAACT
Flanking Amino Acid:
SFWFLLGRRRRQKGEPPLEN
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.5
0.71
0.8
77.2
37.1
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
67
0.61
1.7
80.35
41.7

Associated Gene:

Gene:
CYP7A1
Ensembl Gene ID:
ENSAPLG00000008062
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008400
118473553 - 118481030
7478