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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118498538_118500051_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118498538 - 118500051
Intron Length:
1514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTACAAGATA
Flanking Amino Acid:
EDLKVDKVIQAQTAFSSNPA
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
74.4
0.55
0.8
72.8
32.1
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
47.3
-0.2
2.1
68.21
38.1

Associated Gene:

Gene:
SDCBP
Ensembl Gene ID:
ENSAPLG00000008427
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008795
118498472 - 118507532
9061