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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118500131_118502627_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
118500131 - 118502627
Intron Length:
2497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AACATATTAATG
Flanking Amino Acid:
EASAPIPQDGGLYPRLYPEL
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.5
0.6
0.9
72.9
37.4
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
47.8
-0.3
1.6
48.49
39

Associated Gene:

Gene:
SDCBP
Ensembl Gene ID:
ENSAPLG00000008427
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008795
118498472 - 118507532
9061