Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118502738_118503053_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

118502738 - 118503053

Intron Length:

316

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAGGTATC

5'SS Class:

major

3'SS Sequence:

TTGTCTTAATCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGAAAT

U12 Branch Point Sequence:

TTTGTCTTAATC

Flanking Amino Acid:

PVAAAGQPQGQLVTRPSTNY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

1.1

76.2

39.9

Major BPS

67.2

0.43

1.2

73.3

39.1

Major PPT

74.4

0.55

38.9

Minor 5ss

38.5

-1.3

3.1

45.5

42.9

Minor BPS

76.4

0.81

1.3

81.43

33.4

Associated Gene:

Gene:

SDCBP

Ensembl Gene ID:

ENSAPLG00000008427

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008795

118498472 - 118507532

9061