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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118503213_118504551_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118503213 - 118504551
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
CTGTTTCTACCA
Flanking Amino Acid:
IGLRLKSVDNGIFVQLVQAN
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
88.3
0.86
0.7
83.5
24.7
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
46.7
-0.2
1.9
58.55
41.9

Associated Gene:

Gene:
SDCBP
Ensembl Gene ID:
ENSAPLG00000008427
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008795
118498472 - 118507532
9061