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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118506121_118506515_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118506121 - 118506515
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCAATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGTTCAATAACA
Flanking Amino Acid:
INGQNVIGLKDPQIADILAT
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
85.7
25.6
Major BPS
75.8
0.64
1
65.8
41
Major PPT
69.6
0.44
1
63.8
40.7
Minor 5ss
46.8
-0.3
2.7
66.4
45.1
Minor BPS
63.4
0.42
1.9
79.03
36.4

Associated Gene:

Gene:
SDCBP
Ensembl Gene ID:
ENSAPLG00000008427
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008795
118498472 - 118507532
9061