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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118506608_118507477_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118506608 - 118507477
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TCTGTCTTAAAA
Flanking Amino Acid:
PSSIYEYIIKRMATSIMKSL
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
83.8
0.76
0.7
79.9
25.8
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
65.4
0.48
1.5
71.75
40.6

Associated Gene:

Gene:
SDCBP
Ensembl Gene ID:
ENSAPLG00000008427
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008795
118498472 - 118507532
9061