Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118511318_118512295_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

118511318 - 118512295

Intron Length:

978

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCCTG

5'SS Class:

major

3'SS Sequence:

TTTTTTCCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

GTATTCTAAATT

Flanking Amino Acid:

KVTERIRGHTGGVMSMWMNE

Intron Amino Acid Position:

886

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

65.3

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

88.1

0.86

0.6

81.6

30.5

Minor 5ss

47.6

-0.2

2.8

64.4

Minor BPS

63.2

0.49

1.6

76.98

39.8

Associated Gene:

Gene:

NSMAF

Ensembl Gene ID:

ENSAPLG00000008911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041770

118511223 - 118545156

33934

ENSAPLT00000009340

118511223 - 118547818

36596