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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118512772_118513019_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118512772 - 118513019
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCCTG
5'SS Class:
major
3'SS Sequence:
CCTGCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
AAGAAAATAACT
Flanking Amino Acid:
ISSVTADEPQSTNFFHYPES
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
65.5
45.9
Major BPS
61.3
0.28
1
62
30.6
Major PPT
82.7
0.74
0.8
79.8
32.2
Minor 5ss
41.6
-0.9
3.1
56.4
47.8
Minor BPS
43.8
-0.3
2
60.4
41.9

Associated Gene:

Gene:
NSMAF
Ensembl Gene ID:
ENSAPLG00000008911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029046
118512735 - 118547818
35084