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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118514614_118515346_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118514614 - 118515346
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
GTCTGTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTATCTTGAGCA
Flanking Amino Acid:
YSASWDSTVKVWHCVPGETL
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
75.1
0.57
1
67.8
42.5
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
53.5
0.11
1.7
65.02
41.4

Associated Gene:

Gene:
NSMAF
Ensembl Gene ID:
ENSAPLG00000008911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029046
118512735 - 118547818
35084
ENSAPLT00000009340
118511223 - 118547818
36596
ENSAPLT00000041770
118511223 - 118545156
33934