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Intron Name: Anas_platyrhynchos_platyrhynchos_2_118515784_118517460_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

118515784 - 118517460

Intron Length:

1677

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTCCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAAAA

U12 Branch Point Sequence:

TTTTTCCTACAG

Flanking Amino Acid:

LQRSVSFSNMALSSCLILPG

Intron Amino Acid Position:

673

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.8

80.2

28.3

Major BPS

53.6

0.09

59.9

32.5

Major PPT

89.5

0.89

0.6

84.3

23.8

Minor 5ss

40.6

-1

2.8

49.4

41.4

Minor BPS

-0.2

2.1

64.91

42.8

Associated Gene:

Gene:

NSMAF

Ensembl Gene ID:

ENSAPLG00000008911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029046

118512735 - 118547818

35084

ENSAPLT00000009340

118511223 - 118547818

36596

ENSAPLT00000041770

118511223 - 118545156

33934