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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118519660_118521139_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
118519660 - 118521139
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CATTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTGATGAAAC
Flanking Amino Acid:
FHSVSITESPVSLHEESFED
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.2
0.75
0.8
77.7
34.9
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
45.8
-0.3
2.2
61.95
42.8

Associated Gene:

Gene:
NSMAF
Ensembl Gene ID:
ENSAPLG00000008911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041770
118511223 - 118545156
33934
ENSAPLT00000029046
118512735 - 118547818
35084
ENSAPLT00000009340
118511223 - 118547818
36596