Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118523774_118524715_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

118523774 - 118524715

Intron Length:

942

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTCTACCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTGAT

U12 Branch Point Sequence:

GATCTCAGAACT

Flanking Amino Acid:

CLDGATDFKELIPEFYENDS

Intron Amino Acid Position:

443

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.3

1.04

0.8

79.7

35.4

Major BPS

67.4

0.43

1.1

57.1

41.8

Major PPT

79.9

0.67

0.8

73.8

35.6

Minor 5ss

-1.9

3.2

43.9

Minor BPS

49.6

0.05

1.7

69.77

Associated Gene:

Gene:

NSMAF

Ensembl Gene ID:

ENSAPLG00000008911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009340

118511223 - 118547818

36596

ENSAPLT00000041770

118511223 - 118545156

33934

ENSAPLT00000029046

118512735 - 118547818

35084