About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118527594_118529497_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
118527594 - 118529497
Intron Length:
1904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGCAGT
5'SS Class:
major
3'SS Sequence:
TGTTTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AACCCCTTAATG
Flanking Amino Acid:
ELYFLIATYLENHITEHTAE
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
66.5
44.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80.8
0.69
0.8
78.8
34.4
Minor 5ss
43.5
-0.7
2.6
58.6
45.6
Minor BPS
65.1
0.33
1.4
60.61
41.2

Associated Gene:

Gene:
NSMAF
Ensembl Gene ID:
ENSAPLG00000008911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041770
118511223 - 118545156
33934
ENSAPLT00000029046
118512735 - 118547818
35084
ENSAPLT00000009340
118511223 - 118547818
36596