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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118530547_118531499_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118530547 - 118531499
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
ATTCCCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TCTTCCTTACCA
Flanking Amino Acid:
LYFQPLNGYPKPVVQITLQN
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
77.6
0.62
0.8
70
30.2
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
76.3
0.82
1.6
83.03
38.2

Associated Gene:

Gene:
NSMAF
Ensembl Gene ID:
ENSAPLG00000008911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041770
118511223 - 118545156
33934
ENSAPLT00000029046
118512735 - 118547818
35084
ENSAPLT00000009340
118511223 - 118547818
36596