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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118531630_118532122_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118531630 - 118532122
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
TCTTCACTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTTCTTCACTT
Flanking Amino Acid:
RLARTSFDKNRFQSISETLN
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
79.6
0.67
0.8
74.3
29.6
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
55.5
0.25
1.8
75.4
42.3

Associated Gene:

Gene:
NSMAF
Ensembl Gene ID:
ENSAPLG00000008911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029046
118512735 - 118547818
35084
ENSAPLT00000009340
118511223 - 118547818
36596
ENSAPLT00000041770
118511223 - 118545156
33934