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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118532322_118532702_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118532322 - 118532702
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CAACGTCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCATTTAATG
Flanking Amino Acid:
VGDVVQTLHQLYRASCLDKM
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
77.9
36.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
63.3
0.3
0.9
59
37.7
Minor 5ss
40.5
-1.1
3.2
58.3
46.4
Minor BPS
64.3
0.31
1.5
69.74
37.7

Associated Gene:

Gene:
NSMAF
Ensembl Gene ID:
ENSAPLG00000008911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041770
118511223 - 118545156
33934
ENSAPLT00000029046
118512735 - 118547818
35084
ENSAPLT00000009340
118511223 - 118547818
36596