Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118538182_118538273_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

118538182 - 118538273

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TTACTTGTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAG

U12 Branch Point Sequence:

TTTTTCTTACTT

Flanking Amino Acid:

PDENIQPIIKIPLRDCISIK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.9

81.8

38.5

Major BPS

75.6

0.64

1.5

34.5

Major PPT

81.7

0.71

0.9

76.7

37.2

Minor 5ss

41.1

-1

2.9

57.9

46.4

Minor BPS

75.4

0.88

1.5

91.07

32.9

Associated Gene:

Gene:

NSMAF

Ensembl Gene ID:

ENSAPLG00000008911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029046

118512735 - 118547818

35084

ENSAPLT00000009340

118511223 - 118547818

36596

ENSAPLT00000041770

118511223 - 118545156

33934