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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118538353_118538448_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118538353 - 118538448
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAAG
5'SS Class:
major
3'SS Sequence:
TTTGTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
ACACACACAACT
Flanking Amino Acid:
HIINKGCRDERKIRGSLKIC
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
65.1
40.7
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
83.6
0.76
0.7
82.3
29.8
Minor 5ss
31.1
-2.2
3.2
39.5
46
Minor BPS
44.1
-0.3
1.9
59.79
42.5

Associated Gene:

Gene:
NSMAF
Ensembl Gene ID:
ENSAPLG00000008911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041770
118511223 - 118545156
33934
ENSAPLT00000029046
118512735 - 118547818
35084
ENSAPLT00000009340
118511223 - 118547818
36596