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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118538539_118544924_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118538539 - 118544924
Intron Length:
6386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAATGTG
5'SS Class:
major
3'SS Sequence:
TATTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
MFSLLLLNLE
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
71.5
38.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87
0.83
0.8
81.7
34.5
Minor 5ss
38.1
-1.3
3.5
53.2
44.3
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
NSMAF
Ensembl Gene ID:
ENSAPLG00000008911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041770
118511223 - 118545156
33934