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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118538539_118547765_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118538539 - 118547765
Intron Length:
9227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
RLEQELYSKERFSLLLLNLE
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87
0.83
0.8
81.7
34.5
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
NSMAF
Ensembl Gene ID:
ENSAPLG00000008911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029046
118512735 - 118547818
35084
ENSAPLT00000009340
118511223 - 118547818
36596