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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118548701_118569359_F

Intron Information:

Intron Rank:
136537
Intron Class:
major
Intron Phase:
Intron Coordinates:
118548701 - 118569359
Intron Length:
20659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
AGATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.4
38.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
88.3
0.86
0.6
89.2
19.7
Minor 5ss
41.3
-1
2.5
48.1
42.7
Minor BPS
48.5
-0
1.8
64.97
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023563
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038219
118548644 - 118569510
20867