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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118602682_118604843_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118602682 - 118604843
Intron Length:
2162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TCCCTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCCCTTTGAAC
Flanking Amino Acid:
VDWNNDYCSNGGMQRDKALY
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
71.1
0.48
1
68.2
36.2
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
60.2
0.3
1.4
68.17
37.5

Associated Gene:

Gene:
TOX
Ensembl Gene ID:
ENSAPLG00000009552
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009957
118602645 - 118823794
221150
ENSAPLT00000036795
118602645 - 118725577
122933
ENSAPLT00000026663
118602645 - 118770827
168183
ENSAPLT00000021281
118602645 - 118788409
185765