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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_118627324_118639220_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118627324 - 118639220
Intron Length:
11897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATAT
5'SS Class:
major
3'SS Sequence:
TCTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
ATTAATTTACCA
Flanking Amino Acid:
WDGLGEEQKQVYKKKTEAAK
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
71.2
35.1
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
85.6
0.8
0.7
84.6
30.4
Minor 5ss
37.9
-1.4
3.4
55.8
48.4
Minor BPS
52.2
0.07
1.8
67.42
38.8

Associated Gene:

Gene:
TOX
Ensembl Gene ID:
ENSAPLG00000009552
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009957
118602645 - 118823794
221150
ENSAPLT00000036795
118602645 - 118725577
122933
ENSAPLT00000026663
118602645 - 118770827
168183
ENSAPLT00000021281
118602645 - 118788409
185765